Searching protocol for "chromatin"
Integrate methylation with chromatin signals.
Infer chromatin states from histone marks.
Detect differential TADs to map chromatin changes
ML on genomic intervals
Identify genomic peaks from ChIP-seq & ATAC-seq.
Detect Hi-C chromatin loops from mcool data.
Detect A/B Hi-C compartment shifts.
Reveal regulatory communities from ChIA-PET data.
Annotate loops with promoter/enhancer context.
Genomic interval ML embeddings
Analyze epigenomic data for insights.
Identify UMRs, LMRs and PMDs from WGBS data.