regulatory-community-analysis-ChIA-PET

What problem does it solve?

Protein-mediated regulatory community analysis from ChIA-PET datasets to identify regulatory modules and visualize communities.

Core Features & Use Cases

• Build a peak-centered chromatin interaction network with peaks as nodes and protein-mediated loops as edges.
• Detect regulatory communities using graph clustering and rank hub anchors by centrality.
• Produce interpretable visualizations of the largest communities and compare network structure across conditions.

Quick Start

Provide your ChIA-PET BEDPE and peaks BED files and run the pipeline to produce community memberships and visualizations.