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nf-to-galaxy

Official

Route Nextflow to Galaxy via precise sub-skills.

Software Engineering#routing#Nextflow#tool-wrapping#pipeline-migration#workflow-conversion#Galaxy
Authorgalaxyproject
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Router skill for directing Nextflow conversions to the appropriate Galaxy sub-skills, streamlining the migration from Nextflow to Galaxy.

Core Features & Use Cases

  • Routing: Directs you to the correct sub-skill based on the conversion target (single process → nf-process-to-galaxy-tool, subworkflow → nf-subworkflow-to-galaxy-workflow, or complete pipeline → nf-pipeline-to-galaxy-workflow).
  • Guidance: Provides structure, prerequisites, and decision points to minimize misconfigurations during migration.
  • Use Case: When upgrading a project from Nextflow to Galaxy, you can hand off precise conversion tasks to the appropriate specialized skill.

Quick Start

Start by identifying what you are converting (process, subworkflow, or pipeline) and then invoke the nf-to-galaxy skill to route to the corresponding sub-skill. See the linked SKILL.md in each sub-skill for detailed guidance.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: nf-to-galaxy
Download link: https://github.com/galaxyproject/galaxy-skills/archive/main.zip#nf-to-galaxy

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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