galaxy-integration
OfficialConnect to Galaxy MCP and automate tests.
Authorgalaxyproject
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill enables programmatic interaction with Galaxy instances by routing tool checks, MCP-based exploration, and BioBlend automation for workflow validation and testing.
Core Features & Use Cases
- Interactive exploration: Discover tools, inspect I/O, and test workflows against a Galaxy instance.
- Workflow validation and testing: Validate .ga files for tool availability and run workflows to verify end-to-end results.
- Agent-friendly orchestration: Guide AI agents through MCP-based tasks or automated pipelines in CI-like environments.
Quick Start
- Configure credentials (GALAXY_URL and GALAXY_API_KEY) in a .env file or environment variables.
- Use MCP to connect to Galaxy and perform a simple tool search, e.g. search_tools_by_name(query="hyphy").
- Validate a workflow: load a .ga file and run validate_workflow, then optionally test_workflow with a history.
Dependency Matrix
Required Modules
bioblendpython-dotenv
Components
scripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: galaxy-integration Download link: https://github.com/galaxyproject/galaxy-skills/archive/main.zip#galaxy-integration Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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