nf-pipeline-to-galaxy-workflow
OfficialConvert Nextflow pipelines to Galaxy workflows.
Authorgalaxyproject
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill converts a complete Nextflow pipeline into an equivalent Galaxy workflow, enabling execution within Galaxy without rewriting pipeline logic.
Core Features & Use Cases
- Full pipeline migration: maps all processes, inputs, outputs, and data flow from Nextflow to Galaxy.
- Scope-aware conversion: supports whole pipelines (including nf-core patterns) and planning for subworkflows where appropriate.
- Conversion planning: provides a recommended Galaxy structure (workflow components, subworkflows, and metadata) to guide implementation.
Quick Start
Provide your Nextflow project (main.nf) and optional config to begin the conversion process and obtain a Galaxy workflow plan.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: nf-pipeline-to-galaxy-workflow Download link: https://github.com/galaxyproject/galaxy-skills/archive/main.zip#nf-pipeline-to-galaxy-workflow Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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