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nf-subworkflow-to-galaxy-workflow

Official

Convert Nextflow subworkflows to Galaxy workflows

Software Engineering#workflow#integration#pipeline#convert#Nextflow#Galaxy#subworkflow
Authorgalaxyproject
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Converting Nextflow subworkflows into Galaxy workflows to enable reuse and integration of multi-step pipelines within Galaxy projects.

Core Features & Use Cases

  • Subworkflow mapping: translate a complex Nextflow subworkflow into a Galaxy workflow with step-by-step execution.
  • Data-flow preservation: maintain input/output connections between processes to ensure reproducibility.
  • Reuse & integration: enables modular components to be reused in different Galaxy contexts.

Quick Start

  • Install Nextflow and Galaxy locally to perform the conversion.
  • Identify the target subworkflow and outline its constituent processes.
  • Follow the step-by-step mapping described in this Skill to reconstruct the Galaxy workflow.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: nf-subworkflow-to-galaxy-workflow
Download link: https://github.com/galaxyproject/galaxy-skills/archive/main.zip#nf-subworkflow-to-galaxy-workflow

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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