nf-process-to-galaxy-tool
OfficialNextflow process to Galaxy tool wrapper.
Software Engineering#bioinformatics#conversion#Nextflow#tool-wrapping#workflow-porting#tool-XML#Galaxy
Authorgalaxyproject
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill provides a practical path to convert an individual Nextflow process into a Galaxy tool XML wrapper, enabling rapid porting of workflows to Galaxy.
Core Features & Use Cases
- Convert a single Nextflow process into a Galaxy tool XML wrapper for reusable integration.
- Extract inputs, outputs, and command mappings from the process and generate a compliant tool description.
- Use during pipeline porting when a specific tool wrapper is missing or when validating a tool before release.
Quick Start
Use the conversion workflow on a Nextflow process to generate the corresponding Galaxy tool XML, then validate it with Galaxy tooling.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
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Please help me install this Skill: Name: nf-process-to-galaxy-tool Download link: https://github.com/galaxyproject/galaxy-skills/archive/main.zip#nf-process-to-galaxy-tool Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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