Searching protocol for "peak-calling"
Smart MACS3 peak calling for ChIP/ATAC data
Coordinate replicates for reproducible analysis
Analyze epigenomic data for insights.
Clean BAMs by removing artifacts for peak calls.
Identify genomic peaks from ChIP-seq & ATAC-seq.
ML for genomic intervals
ML for genomic intervals
ChIP-seq QC: NSC/RSC and FRiP metrics
ML for genomic intervals & scATAC-seq
ATAC-seq QC: quick, robust quality metrics.
ML for genomic intervals (BED files).