ChIPseq-QC
CommunityChIP-seq QC: NSC/RSC and FRiP metrics
AuthorBIsnake2001
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill provides QC metrics for ChIP-seq data by computing cross-correlation (NSC/RSC) and FRiP from aligned BAMs and called peaks, enabling assessment of ChIP data quality before downstream analysis.
Core Features & Use Cases
- Cross-correlation analysis: calculates NSC and RSC to evaluate signal enrichment and data quality.
- FRiP computation: estimates the fraction of reads within peak regions to gauge enrichment.
- Output & workflow integration: organizes results under an all_chip_qc directory and supports integration with downstream QC reporting.
Quick Start
Run this skill after peak calling to produce QC metrics for your ChIP-seq BAM and peak files.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: ChIPseq-QC Download link: https://github.com/BIsnake2001/ChromSkills/archive/main.zip#chipseq-qc Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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