archr-local

What problem does it solve?

This Skill provides comprehensive, offline ArchR documentation for single-cell ATAC-seq analysis, hosted locally to enable quick reference without internet access.

Core Features & Use Cases

• Reference documentation: Access core ArchR topics such as data preparation, dimensionality reduction, clustering, motif analysis, and multiome workflows directly from the repository.
• Self-contained learning: Ideal for researchers and students who need offline guidance and reproducible examples.
• Use Case: A lab team can train new analysts using the included chapters like data_preparation.md, dimensionality_reduction.md, and enrichment_analysis.md without external connectivity.

Quick Start

Browse the archr-local/references directory and start with data_preparation.md to learn how ArchR handles input formats and project setup. Then explore dimensionality_reduction.md and clustering.md for common workflows.