topexpressinggenesofallcells
CommunityTop expressed genes per cluster with enrichment.
Data & Analytics#single-cell#gene-expression#seurat#rna-seq#cluster-analysis#top-expressed#pathway-enrichment
Authorpwwang
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Identifies and visualizes the top expressing genes per cluster across ALL cells (before T/B cell selection), followed by pathway enrichment analysis to provide an initial overview of cell populations and their functional signatures.
Core Features & Use Cases
- Top gene per cluster: Highlights the most characteristic genes for each cluster before any T/B cell pre-selection.
- Pathway enrichment: Integrates enrichment analyses to interpret cluster-level gene signatures.
- Quality overview: Serves as a preliminary check to assess broad cell-type composition prior to downstream filtering.
Quick Start
Run TopExpressingGenesOfAllCells after SeuratClusteringOfAllCells to generate top cluster genes and enrichment results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: topexpressinggenesofallcells Download link: https://github.com/pwwang/immunopipe/archive/main.zip#topexpressinggenesofallcells Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.