clustermarkersofallcells

What problem does it solve?

Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, Myeloid cells, NK cells, etc.) in mixed immune cell populations.

Core Features & Use Cases

• Identifies broad cell-type markers across all clusters to guide downstream T/B cell selection.
• Supports differential expression analysis using Seurat FindMarkers-like parameters and enrichment of markers for downstream annotation.
• Provides example workflows for Quick Identification of major lineages prior to targeted subtyping.

Quick Start

Run the clustering markers step to extract top markers per cluster for downstream T or B cell selection.