spatial-register
OfficialAlign spatial transcriptomics slices
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the alignment of spatial coordinates across multiple tissue slices, which is crucial for integrating and analyzing serial sections or replicate experiments in spatial transcriptomics.
Core Features & Use Cases
- Multi-slice Alignment: Aligns N slices to a reference slice using methods like Procrustes or PASTE.
- Coordinate Transformation: Updates spatial coordinates to reflect the aligned positions.
- Use Case: Aligning serial sections of a tumor to reconstruct a 3D spatial map or comparing gene expression patterns across replicate tissue samples.
Quick Start
Align my spatial transcriptomics slices using the PASTE method.
Dependency Matrix
Required Modules
scanpyscipynumpypandasmatplotlib
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: spatial-register Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#spatial-register Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.