banksy-merged-v3
CommunitySpatial BANKSY analysis for transcriptomics.
AuthorKetomihine
Version1.0.0
Installs0
System Documentation
What problem does it solve?
BANKY-merged-v3 provides a complete, reproducible workflow for spatial transcriptomics analysis using BANKSY, enabling multisample integration, spatial clustering, and advanced visualization.
Core Features & Use Cases
- Multisample BANKSY analysis across spatial platforms (e.g., Visium, Slide-seq) with coordinate staggering to avoid sample overlap.
- End-to-end pipeline including HVG selection, PCA, harmonization, Leiden clustering, and spatial visualization.
- Reference notebooks and core library materials to reproduce and extend BANKSY workflows.
Quick Start
Open and run the notebooks in references/notebooks.md to reproduce the BANKSY analysis workflow on multisample spatial data and adapt parameters for your datasets.
Dependency Matrix
Required Modules
numpyscipypandasanndatascanpyigraphleidenalgmatplotlibseaborn
Components
scriptsreferencesassets
💻 Claude Code Installation
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Please help me install this Skill: Name: banksy-merged-v3 Download link: https://github.com/Ketomihine/my_skills/archive/main.zip#banksy-merged-v3 Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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