snakemake-compact

What problem does it solve?

This skill provides ready-to-use Snakemake patterns that keep rules small and the complex logic in Python modules, reducing boilerplate and improving readability.

Core Features & Use Cases

• Compact Rule Design: Keep Snakefiles minimal by moving advanced logic into helper modules and using includes.
• Modular Pipelines: Structure workflows into reusable components with clear separation of configuration and code.
• Use Case: Quickly prototype a data analysis pipeline by composing small, tested rules and Python helpers to handle common steps.

Quick Start

• Install Snakemake and initialize a project that leverages the compact patterns.
• Import and reference the provided modular patterns in your Snakefile to start building a reproducible workflow.