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mixed-r-python-pipeline

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Wrap Snakemake projects into a reusable CLI.

Software Engineering#automation#workflow#python#cli#packaging#snakemake
AuthorCodingKaiser
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Turn Snakemake projects into reusable, pip-installable CLI tools so teams can deploy workflows to new projects without manual setup.

Core Features & Use Cases

  • Converts a working Snakemake project (Snakefile + src/) into a distributable CLI tool.
  • Provides init, validate, update, clean, and info commands to manage deployment and lifecycle.
  • Supports template copying, config generation, and deployment to new projects in a repeatable way.

Quick Start

Use the mixed-r-python-pipeline CLI to initialize a new project at /path/to/new/project and deploy Snakefile + src/.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: mixed-r-python-pipeline
Download link: https://github.com/CodingKaiser/kaiser-skills/archive/main.zip#mixed-r-python-pipeline

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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