service-omero-integration
OfficialManage microscopy data with OMERO.
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the complex process of managing, accessing, and analyzing microscopy data stored in OMERO, a leading platform for biological image data.
Core Features & Use Cases
- Data Access: Connect to OMERO servers and retrieve images, datasets, and projects.
- Metadata Management: Add, query, and manage tags, key-value pairs, and file annotations.
- Image Analysis: Access pixel data, perform basic image manipulations, and analyze regions of interest (ROIs).
- Automation: Create server-side scripts for batch processing and automated workflows.
- Use Case: A researcher needs to batch-process thousands of microscopy images stored in OMERO. They can use this Skill to write a script that automatically retrieves each image, segments cells using ROIs, extracts intensity measurements, and saves the results to an OMERO table.
Quick Start
Use the service-omero-integration skill to connect to your OMERO server and list all projects.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: service-omero-integration Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#service-omero-integration Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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