omero-integration
CommunityManage and analyze microscopy data.
AuthorRowtion
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the management, visualization, and analysis of complex microscopy image data, eliminating the need for manual data wrangling and configuration.
Core Features & Use Cases
- Data Access: Programmatically access and navigate OMERO's hierarchical data structure (Projects, Datasets, Images, Screens, Plates).
- Metadata Management: Create, retrieve, and manage annotations, tags, and key-value pairs.
- Image Analysis: Extract pixel data, perform image processing, and analyze regions of interest (ROIs).
- Batch Operations: Automate workflows for high-content screening and large-scale data analysis using OMERO.scripts.
- Use Case: A researcher can use this Skill to automatically retrieve all images from a specific dataset, segment cells within defined ROIs, extract intensity measurements, and store the results in an OMERO Table for further statistical analysis.
Quick Start
Use the omero-integration skill to connect to your OMERO server and list all projects.
Dependency Matrix
Required Modules
omero-py
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: omero-integration Download link: https://github.com/Rowtion/Bioclaw/archive/main.zip#omero-integration Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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