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servalcat

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Cryo-EM refinement and map calculation toolkit.

Education & Research#refinement#spa#maps#cryo-EM#servalcat#fo-fc
Authorfarnunglab
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Servalcat enables reciprocal-space refinement and map calculation for cryo-EM SPA and crystallography, delivering properly weighted Fo-Fc difference maps and refined models.

Core Features & Use Cases

  • Reciprocal-space refinement against half-maps with automatic Fo-Fc map calculation.
  • Fo-Fc map calculation workflows, including omit-map scenarios for ligands and applications to crystallographic refinement.
  • Utility commands for map trimming, NCS/symmetry expansion, and external restraints support for refinement.
  • Workflow-ready guidance and example commands to reproduce SPA and crystallographic refinements.

Quick Start

Install Servalcat and run a basic SPA refinement with your model.pdb and half-maps to generate a refined structure.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: servalcat
Download link: https://github.com/farnunglab/benchaid/archive/main.zip#servalcat

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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