sequence-io
CommunityRead, write, and manipulate sequences fast.
Authordakesan
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies working with biological sequence files across FASTA, GenBank, and FASTQ formats. It also provides indexed access to large FASTA references and handy sequence operations to streamline genomics workflows.
Core Features & Use Cases
- File I/O: Read and write FASTA, GenBank, and FASTQ files.
- Format Conversion: Convert between common sequence formats.
- Sequence Operations: Complement, reverse-complement, and translate sequences.
- Indexed Access: Efficient random access to large indexed FASTA files via faidx.
- Use Case: Quickly extract a sub-sequence from a reference and compute GC content across many files.
Quick Start
Read sequences from 'reference.fasta' and print basic metadata (IDs and lengths).
Dependency Matrix
Required Modules
biopythonpysam
Components
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: sequence-io Download link: https://github.com/dakesan/cc-dnawork-plugin/archive/main.zip#sequence-io Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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