prokka-genome-annotation
CommunityAnnotate prokaryotic genomes rapidly.
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the process of annotating prokaryotic genomes, identifying genes and other features to understand their function.
Core Features & Use Cases
- Automated Gene Prediction: Identifies protein-coding genes (CDS), tRNAs, and rRNAs using Prodigal and other tools.
- Functional Annotation: Assigns functions to genes by searching against comprehensive databases like Pfam and RefSeq.
- Output Formats: Generates standard annotation files (GFF3, GenBank, FASTA, TSV) for downstream analysis.
- Use Case: Annotate a newly sequenced bacterial genome to identify all its genes and their potential functions, enabling comparative genomics studies.
Quick Start
Annotate the bacterial genome assembly in 'genome.fasta' using Prokka, saving results to the 'annotation/' directory with the prefix 'my_genome'.
Dependency Matrix
Required Modules
prokkabiopythonpandasmatplotlib
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: prokka-genome-annotation Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#prokka-genome-annotation Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.