pegasus-scaffold
OfficialGenerate Pegasus workflow projects
Authorpegasus-isi
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the creation of new Pegasus workflow projects, significantly reducing the boilerplate code and setup time required for new bioinformatics or data analysis pipelines.
Core Features & Use Cases
- Project Scaffolding: Generates all necessary files for a new Pegasus workflow, including the workflow generator, wrapper scripts, Dockerfile, README, and manual run script.
- Guided Configuration: Prompts the user for essential pipeline details like name, steps, data sources, parallelism patterns, and tool requirements to tailor the generated project.
- Use Case: A researcher needs to set up a new variant calling pipeline. They can use
/pegasus-scaffoldto quickly generate a well-structured project template, which they can then customize with their specific tools and parameters.
Quick Start
Use the pegasus-scaffold skill to create a new workflow project named 'my-variant-calling-pipeline'.
Dependency Matrix
Required Modules
None requiredComponents
referencesscripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: pegasus-scaffold Download link: https://github.com/pegasus-isi/pegasus-workflow-toolkit/archive/main.zip#pegasus-scaffold Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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