pegasus-dockerfile
OfficialBuild Docker images for Pegasus workflows
Software Engineering#workflow automation#pip#dependency management#containerization#dockerfile#pegasus wms#micromamba
Authorpegasus-isi
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the creation of Dockerfiles, ensuring that all necessary tools and dependencies for a Pegasus workflow are correctly packaged into a container image.
Core Features & Use Cases
- Dockerfile Generation: Creates Dockerfiles tailored to specific workflow requirements, supporting both pip and micromamba package managers.
- Dependency Management: Helps identify and include all required system and Python packages, handling potential version conflicts.
- Use Case: You need to deploy a complex bioinformatics workflow on Pegasus. This Skill will help you generate a Dockerfile that includes all the specialized bioinformatics tools and Python libraries, ensuring your workflow runs consistently in a containerized environment.
Quick Start
Use the pegasus-dockerfile skill to generate a Dockerfile for a workflow that requires Python 3.8, pandas, and samtools.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: pegasus-dockerfile Download link: https://github.com/pegasus-isi/pegasus-workflow-toolkit/archive/main.zip#pegasus-dockerfile Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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