multiqc-qc-reports
CommunityAggregate bioinformatics QC reports
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the aggregation of quality control (QC) reports from over 150 bioinformatics tools, consolidating them into a single, interactive HTML report for efficient review of next-generation sequencing (NGS) pipeline outputs.
Core Features & Use Cases
- Multi-Sample Aggregation: Parses QC logs from tools like FastQC, samtools, STAR, Salmon, and GATK across numerous samples.
- Interactive HTML Reports: Generates comprehensive reports with plots, tables, and configurable thresholds.
- Use Case: After running a full RNA-seq pipeline on 48 samples, use this Skill to generate a single report summarizing the QC metrics for all samples, highlighting any potential issues or batch effects.
Quick Start
Run MultiQC on the current directory to generate a consolidated QC report.
Dependency Matrix
Required Modules
multiqc
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: multiqc-qc-reports Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#multiqc-qc-reports Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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