deeptools
CommunityAnalyze NGS data with powerful visualization tools.
AuthorRowtion
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies complex Next-Generation Sequencing (NGS) data analysis by providing a suite of command-line tools for visualization, quality control, and data processing.
Core Features & Use Cases
- Data Conversion: Convert BAM alignment files to normalized bigWig tracks for genome browsers.
- Quality Control: Assess sample quality with correlation plots, PCA, fingerprints, and fragment size analysis.
- Visualization: Generate publication-quality heatmaps and profile plots around genomic features like TSS or peaks.
- Use Case: Analyze ChIP-seq data by converting BAM files to bigWig, checking sample correlation, and visualizing signal enrichment around gene promoters.
Quick Start
Use the deeptools skill to convert the file 'sample.bam' into a normalized bigWig file named 'sample.bw'.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: deeptools Download link: https://github.com/Rowtion/Bioclaw/archive/main.zip#deeptools Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.