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lib-scikit-bio

Official

Bioinformatics toolkit for biological data.

Education & Research#bioinformatics#genomics#sequence analysis#ecology#phylogenetics#microbiome
Authorbiomaps-infra
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill streamlines complex bioinformatics analyses, from sequence manipulation to microbial ecology, by providing a comprehensive Python toolkit.

Core Features & Use Cases

  • Sequence Analysis: Process DNA, RNA, and protein sequences, including alignment and motif finding.
  • Phylogenetic Tree Construction: Build and analyze evolutionary relationships.
  • Diversity Metrics: Calculate alpha and beta diversity for ecological data.
  • Ordination & Statistics: Perform PCoA, PERMANOVA, and other statistical tests on biological data.
  • Use Case: Analyze microbiome data by reading a BIOM table, calculating beta diversity using UniFrac distances, and visualizing sample relationships with PCoA.

Quick Start

Use the lib-scikit-bio skill to calculate the Shannon diversity for the provided counts matrix.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: lib-scikit-bio
Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-scikit-bio

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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