scikit-bio
CommunityBiological data toolkit.
Education & Research#python#bioinformatics#sequence analysis#phylogenetics#microbiome#diversity analysis
AuthorRowtion
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies complex biological data analysis by providing a comprehensive Python toolkit for sequence analysis, phylogenetics, and community ecology.
Core Features & Use Cases
- Sequence Analysis: Manipulate DNA, RNA, and protein sequences, perform alignments, and handle biological file formats.
- Phylogenetics: Construct, analyze, and visualize evolutionary trees.
- Diversity Metrics: Calculate alpha and beta diversity for ecological and microbiome data.
- Ordination & Statistics: Reduce dimensionality and test hypotheses on biological datasets.
- Use Case: Analyze microbiome data by calculating alpha and beta diversity metrics, performing PCoA, and testing for significant differences between sample groups using PERMANOVA.
Quick Start
Use the scikit-bio skill to calculate the Shannon diversity for the provided OTU table.
Dependency Matrix
Required Modules
scikit-bionumpy
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scikit-bio Download link: https://github.com/Rowtion/Bioclaw/archive/main.zip#scikit-bio Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.