scikit-bio
CommunityBiological data toolkit for bioinformatics.
Authorjackspace
Version1.0.0
Installs0
System Documentation
What problem does it solve?
scikit-bio provides a comprehensive Python library for working with biological data, enabling sequence manipulation, alignments, phylogenetics, diversity analysis, and multivariate statistics.
Core Features & Use Cases
- Sequence manipulation: DNA/RNA/Protein handling, translations, reverse complements
- Sequence alignment: Global/local alignments, MSA storage, and consensus
- Phylogenetic trees: Construction, traversal, and comparison
- Diversity & ordination: Alpha/beta diversity, UniFrac, PCoA, and related stats
- File I/O: Read/write formats (FASTA, FASTQ, GenBank, Newick, BIOM)
- Statistical tests: PERMANOVA, ANOSIM, Mantel, etc.
Quick Start
Demonstrate reading a FASTA file, performing a simple alignment, building a tree, and computing a basic diversity metric.
Dependency Matrix
Required Modules
scikit-bio
Components
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scikit-bio Download link: https://github.com/jackspace/ClaudeSkillz/archive/main.zip#scikit-bio Please download this .zip file, extract it, and install it in the .claude/skills/ directory.