lib-etetoolkit
OfficialMaster phylogenetic trees with ETE Toolkit.
Education & Research#bioinformatics#evolutionary biology#phylogenetics#ete toolkit#orthology#tree analysis
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies complex phylogenetic tree manipulation, analysis, and visualization, making advanced bioinformatics accessible.
Core Features & Use Cases
- Tree Manipulation: Load, modify, and save trees in various formats (Newick, NHX).
- Phylogenetic Analysis: Detect evolutionary events, identify orthologs, and analyze gene families.
- Taxonomy Integration: Connect trees with NCBI taxonomy for annotation and lineage tracing.
- Visualization: Generate publication-quality tree figures in PDF, SVG, or PNG.
- Use Case: Analyze a large gene tree to identify orthologous genes across species and visualize the evolutionary relationships with integrated taxonomic information.
Quick Start
Use the lib-etetoolkit skill to load the tree file 'tree.nw', reroot it using the midpoint method, and save the result to 'rooted_tree.nw'.
Dependency Matrix
Required Modules
ete3
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: lib-etetoolkit Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#lib-etetoolkit Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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