etetoolkit
CommunityPhylogenetic tree toolkit for exploration and analysis.
Authorjackspace
Version1.0.0
Installs0
System Documentation
What problem does it solve?
ETE Toolkit provides a robust suite for manipulating, analyzing, and visualizing phylogenetic trees, with NCBI taxonomy integration and advanced tree operations.
Core Features & Use Cases
- Tree I/O: Read/write Newick, NHX, PhyloXML, NeXML
- Traversal & topology: prune, root, collapse nodes, resolve polytomies
- Phylogenetic analyses: orthology/paralogy, gene-tree reconciliation
- Taxonomy integration: NCBI taxonomy lookup and annotation
- Visualization: publication-ready tree rendering
Quick Start
Load a tree, prune taxa, root at midpoint, and render a PDF visualization.
Dependency Matrix
Required Modules
ete3
Components
referencesscripts
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: etetoolkit Download link: https://github.com/jackspace/ClaudeSkillz/archive/main.zip#etetoolkit Please download this .zip file, extract it, and install it in the .claude/skills/ directory.