etetoolkit
CommunityMaster phylogenetic trees with ETE Toolkit.
Education & Research#bioinformatics#visualization#evolutionary biology#phylogenetics#tree analysis#ncbi taxonomy
AuthorRowtion
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies complex phylogenetic tree manipulation, analysis, and visualization, making advanced bioinformatics tasks accessible.
Core Features & Use Cases
- Tree Manipulation: Load, modify, prune, and root trees in various formats (Newick, NHX).
- Phylogenetic Analysis: Detect evolutionary events, identify orthologs, and analyze gene families.
- Taxonomy Integration: Connect trees with NCBI Taxonomy for annotation and lineage retrieval.
- Visualization: Generate publication-quality tree figures in PDF, SVG, and PNG.
- Use Case: Analyze a large gene tree, identify orthologous relationships across species, and visualize the results with evolutionary events clearly marked.
Quick Start
Use the etetoolkit skill to visualize the tree in 'my_tree.nw' as a PDF file.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: etetoolkit Download link: https://github.com/Rowtion/Bioclaw/archive/main.zip#etetoolkit Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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