instrument-data-to-allotrope
CommunityStandardize lab instrument data to ASM JSON.
Education & Research#data engineering#data standardization#asm#allotrope#instrument data#lims integration
Author8GG-Git
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the conversion of raw laboratory instrument output files into a standardized, machine-readable format (Allotrope Simple Model - ASM JSON), streamlining data integration into LIMS, data lakes, and downstream analysis pipelines.
Core Features & Use Cases
- Format Standardization: Converts various instrument file formats (PDF, CSV, Excel, TXT) into compliant ASM JSON.
- Data Harmonization: Ensures consistent data structure and semantics for easier analysis and system integration.
- Output Flexibility: Generates full ASM JSON, flattened 2D CSV, and exportable Python parser code.
- Use Case: A scientist needs to upload daily instrument readings to a LIMS system. This Skill automatically converts the instrument's proprietary output file into the LIMS-compatible ASM JSON format, ensuring data integrity and reducing manual data entry errors.
Quick Start
Use the instrument-data-to-allotrope skill to convert the file 'sample_data.csv' into ASM JSON format.
Dependency Matrix
Required Modules
allotropypandasopenpyxlpdfplumber
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: instrument-data-to-allotrope Download link: https://github.com/8GG-Git/knowledge-work-plugins/archive/main.zip#instrument-data-to-allotrope Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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