hic-tad-calling
CommunityIdentify and visualize Hi-C TADs from Hi-C data.
AuthorBIsnake2001
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill helps researchers identify and visualize topologically associating domains (TADs) from Hi-C data stored in .mcool or .cool files, enabling region-specific analyses and interpretability of genome organization.
Core Features & Use Cases
- TAD calling: automated identification of TAD boundaries using HiCExplorer and related tools.
- Visualization: generate contact maps with TAD boundaries overlaid for specified loci.
- Inputs supported: works with .mcool, .cool, or .hic files and requires a genome assembly.
Quick Start
Provide your sample name, mcool file path, and target genome region to run TAD calling and generate visualization outputs.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: hic-tad-calling Download link: https://github.com/BIsnake2001/ChromSkills/archive/main.zip#hic-tad-calling Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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