db-reactome
OfficialExplore biological pathways and interactions.
Education & Research#bioinformatics#pathway analysis#systems biology#reactome#gene enrichment#molecular interactions
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the complex process of querying biological pathway data and performing enrichment analysis, enabling researchers to gain deeper insights into biological systems.
Core Features & Use Cases
- Pathway Data Retrieval: Access detailed information about biological pathways, reactions, and molecular entities.
- Pathway Enrichment Analysis: Identify statistically significant pathways from gene or protein lists.
- Expression Data Analysis: Analyze gene expression datasets to uncover relevant biological pathways.
- Use Case: A researcher has a list of genes identified in a recent experiment and wants to understand which biological pathways are most affected. This Skill can take the gene list and return the top enriched pathways with associated statistical significance.
Quick Start
Use the db-reactome skill to perform overrepresentation analysis on the gene list provided in the file 'my_genes.txt'.
Dependency Matrix
Required Modules
requestsreactome2py
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: db-reactome Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#db-reactome Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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