reactome-database
CommunityExplore biological pathways and interactions.
Education & Research#bioinformatics#pathway analysis#systems biology#reactome#gene enrichment#molecular interactions
AuthorRowtion
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies the process of querying and analyzing biological pathway data, enabling researchers to understand complex biological processes and gene functions without needing to directly interact with complex APIs.
Core Features & Use Cases
- Pathway Enrichment Analysis: Identify significant biological pathways from gene lists.
- Gene-Pathway Mapping: Discover pathways associated with specific genes or proteins.
- Data Retrieval: Access detailed information about pathways, reactions, and molecular entities.
- Use Case: A researcher has a list of differentially expressed genes from an RNA-Seq experiment and wants to know which biological pathways are most affected. This Skill can take the gene list and return the top enriched pathways.
Quick Start
Use the reactome-database skill to perform pathway enrichment analysis on the gene list provided in 'my_genes.txt'.
Dependency Matrix
Required Modules
requestsreactome2py
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: reactome-database Download link: https://github.com/Rowtion/Bioclaw/archive/main.zip#reactome-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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