cellxgene-census
CommunityQuery the CELLxGENE Census
AuthorRowtion
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides programmatic access to the CELLxGENE Census, a massive collection of single-cell genomics data, enabling researchers to query and analyze millions of cells efficiently without needing to download or manage large datasets locally.
Core Features & Use Cases
- Query Expression Data: Retrieve gene expression data for specific cell types, tissues, or diseases.
- Explore Metadata: Discover available datasets, cell types, tissues, and other annotations.
- Large-Scale Analysis: Supports out-of-core processing for queries exceeding available RAM.
- ML Integration: Seamlessly integrates with PyTorch for model training.
- Scanpy Integration: Works directly with scanpy for downstream analysis.
- Use Case: A researcher wants to find all human B cells in lung tissue across all available datasets in the Census and analyze their gene expression patterns.
Quick Start
Use the cellxgene-census skill to open the latest stable version of the Census and query for all human B cells in lung tissue.
Dependency Matrix
Required Modules
cellxgene-censusscanpypytorchtiledbsomapyarrow
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cellxgene-census Download link: https://github.com/Rowtion/Bioclaw/archive/main.zip#cellxgene-census Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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