cellxgene-census
CommunityQuery CELLxGENE Census at scale.
Authorjackspace
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides programmatic access to the CZ CELLxGENE Census for population-scale single-cell data across millions of cells and datasets.
Core Features & Use Cases
- Open census, filter by tissue/disease/cell type
- Retrieve expression matrices, embeddings, and pre-calculated statistics
- Integration with scanpy and PyTorch for ML workflows
- Support large-scale, out-of-core analyses
Quick Start
Install the cellxgene-census package, open the census with open_soma, and load expression data.
Dependency Matrix
Required Modules
cellxgene-censusscanpyanndata
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cellxgene-census Download link: https://github.com/jackspace/ClaudeSkillz/archive/main.zip#cellxgene-census Please download this .zip file, extract it, and install it in the .claude/skills/ directory.