cellchat-cell-communication
CommunityMap cell-cell communication networks.
Education & Research#bioinformatics#network analysis#single-cell#cell communication#rna-seq#cellchat
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the inference, analysis, and visualization of intercellular communication networks from single-cell RNA-seq data, revealing how different cell types interact within a tissue or biological system.
Core Features & Use Cases
- Infer Interactions: Identify ligand-receptor pairs mediating communication between cell groups.
- Pathway Analysis: Aggregate interactions into signaling pathways (e.g., VEGF, MHC-II).
- Network Visualization: Generate chord diagrams, heatmaps, and bubble plots to explore communication patterns.
- Use Case: Understand how tumor cells communicate with immune cells in the tumor microenvironment to identify potential therapeutic targets.
Quick Start
Use the cellchat-cell-communication skill to infer and visualize cell-cell communication pathways from your Seurat object.
Dependency Matrix
Required Modules
CellChatSeuratNMFggplot2ggalluvialigraphdplyrpatchworkreticulatecirclizeRColorBrewer
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cellchat-cell-communication Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#cellchat-cell-communication Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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