ucsc-genome-browser
CommunityAccess UCSC Genome Browser data.
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides programmatic access to a vast repository of genomic annotations and sequences from the UCSC Genome Browser, enabling researchers to retrieve and analyze biological data without manual web browsing.
Core Features & Use Cases
- Sequence Retrieval: Fetch DNA sequences for any genomic region across multiple assemblies.
- Annotation Querying: Retrieve gene models, conservation scores, and other annotation tracks.
- Metadata Discovery: List available tracks and chromosome sizes for a given genome assembly.
- Use Case: Obtain the DNA sequence for a specific gene promoter region, or find all known CpG islands within a given locus.
Quick Start
Use the ucsc-genome-browser skill to get the DNA sequence for chr17:7676520-7676620 in hg38.
Dependency Matrix
Required Modules
requestsmatplotlib
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: ucsc-genome-browser Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#ucsc-genome-browser Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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