trackpy-particle-tracking
CommunityTrack particles in microscopy videos.
Education & Research#image analysis#microscopy#biophysics#particle tracking#diffusion analysis#trackpy
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the process of tracking individual particles in microscopy videos, enabling quantitative analysis of their movement and diffusion behavior.
Core Features & Use Cases
- Particle Detection: Locates particles in individual frames with subpixel accuracy.
- Trajectory Linking: Connects detections across frames to form continuous particle paths.
- MSD Analysis: Computes Mean Squared Displacement to determine diffusion coefficients and motion types.
- Use Case: Analyze the diffusion of fluorescently labeled molecules in a cell membrane to understand cellular processes.
Quick Start
Use the trackpy-particle-tracking skill to analyze the provided 'particles.tif' file, linking trajectories and computing the ensemble MSD.
Dependency Matrix
Required Modules
trackpypimspandasnumpymatplotlibscipy
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: trackpy-particle-tracking Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#trackpy-particle-tracking Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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