tracking-taxonomy-updates
CommunityCoordinate taxonomy updates with provenance.
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Track and reconcile taxonomy updates from major authorities (NCBI Taxonomy, GTDB, ICTV, and UniEuk) with versioned provenance to ensure reproducible naming and lineage assignments across studies.
Core Features & Use Cases
- Versioned reports that summarize changes across domains (Bacteria, Archaea, viruses, and eukaryotes).
- Provenance tracking of sources, release identifiers, and run dates to support auditability.
- Cross-source conflict detection and guidance for updating downstream pipelines and databases.
- Use case: researchers monitor GTDB vs NCBI taxonomy shifts to align taxids and lineage mappings for longitudinal analyses.
Quick Start
Pull taxonomy updates from authoritative sources for a defined domain and timeframe, then generate a versioned report with explicit provenance.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: tracking-taxonomy-updates Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#tracking-taxonomy-updates Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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