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topexpressinggenes

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Top genes per cluster with pathway enrichment.

Data & Analytics#visualization#enrichment#pathway-analysis#clusters#scrna-seq#tcr-bcr#top-expressing-genes
Authorpwwang
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Identifies and visualizes the top expressing genes per cluster in T/B cells, followed by pathway enrichment analysis to interpret cluster programs.

Core Features & Use Cases

  • Top gene profiling: identifies the top expressed genes per cluster.
  • Enrichment analysis: performs pathway enrichment using selected databases.
  • Visualizations: provides plots and summaries to aid quick cluster characterization.

Quick Start

Provide the SeuratClustering output to TopExpressingGenes to generate the top expressed genes per cluster and enrichment visuals.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: topexpressinggenes
Download link: https://github.com/pwwang/immunopipe/archive/main.zip#topexpressinggenes

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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