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tooluniverse-expression-data-retrieval

Official

Fetch gene expression data with quality reports.

Data & Analytics#omics#disambiguation#retrieve#gene expression#data profiling#BioStudies#ArrayExpress
Authormims-harvard
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This skill addresses the need to locate, disambiguate, and retrieve gene expression experiments and multi-omics datasets from public repositories, and to produce structured datasets profiles with metadata, sample information, and download links.

Core Features & Use Cases

  • Gene/Experiment Disambiguation: resolves official gene identifiers and aliases to enable precise queries.
  • Data Retrieval & Profiling: searches ArrayExpress (E-MTAB, E-GEOD) and BioStudies (S-BSST), gathers metadata and sample information, and compiles a dataset profile with download links.
  • Multi-Omics Integration: surfaces multi-omics studies from BioStudies and guides data integration.
  • Use Case: A researcher needs RNA-seq data for human liver; the skill retrieves relevant experiments, quality indicators, and links to processed and raw data.

Quick Start

Use the skill to search for "RNA-seq breast cancer" in Homo sapiens and generate a dataset profile with top results and links to data files.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: tooluniverse-expression-data-retrieval
Download link: https://github.com/mims-harvard/ToolUniverse/archive/main.zip#tooluniverse-expression-data-retrieval

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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