thermo-free-energy-and-reporting

Convert electronic-structure outputs into comparable thermodynamic and free-energy summaries.

13|1|Updated Nov 27, 2025
One-click install
npx skills add https://github.com/q734738781/CatMaster --skill thermo-free-energy-and-reporting
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: thermo-free-energy-and-reporting
Source: https://github.com/q734738781/CatMaster/tree/main/skills/thermo-free-energy-and-reporting
Command: npx skills add https://github.com/q734738781/CatMaster --skill thermo-free-energy-and-reporting

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Convert raw electronic-structure outputs and mixed energy conventions into audit-ready thermodynamic comparisons so that catalyst candidates can be fairly ranked and interpreted.

Core Features & Use Cases

  • Consistent normalization: Enforces a single reference-state convention and explicit unit reporting across compared entries.
  • Validation guidance: Advises exclusion of unconverged or pathological structures and highlights required corrections for free-energy estimates.
  • Auditable outputs: Produces comparison-ready tables with artifact paths, value definitions, and caveats suitable for manuscript or report inclusion.
  • Use Case: Prepare a ranked table of adsorption free energies for a set of slab+adsorbate simulations with clear reference states and correction notes.

Quick Start

Use the thermo-free-energy-and-reporting skill to convert validated electronic energies and corrections into a comparison-ready free-energy table with explicit units and reference conventions.

Frequently Asked Questions about thermo-free-energy-and-reporting

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I normalize adsorption free energies from slab simulations for catalyst ranking?▼

Normalize adsorption free energies by enforcing a single reference-state convention and explicit unit reporting across slab, adsorbed, and gas-phase entries to produce a comparison-ready ranked table.

What is the best way to report thermodynamic corrections for electronic-structure outputs?▼

Report thermodynamic corrections by applying validated electronic energies and required corrections to generate auditable tables with artifact paths, value definitions, and caveats suitable for manuscript inclusion.

Can I compare catalyst pathway energies if my simulations use mixed reference states?▼

Compare pathway energies by converting mixed electronic-structure conventions into a single fixed reference-state convention with explicit units, enabling fair thermodynamic comparisons and candidate ranking.

Do I need converged electronic energies before calculating free-energy summaries?▼

Validated converged electronic energies are required to calculate free-energy summaries, as unconverged or pathological structures should be excluded to ensure accurate thermodynamic normalization.

How to handle unconverged structures when normalizing catalyst thermodynamic data?▼

Exclude unconverged or pathological structures during normalization and highlight required corrections for free-energy estimates to ensure audit-ready thermodynamic comparisons and accurate catalyst ranking.