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tcga-survival-analysis

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Analyze TCGA data and generate survival insights.

Data & Analytics#survival-analysis#gene-expression#lifelines#tcga#kaplan-meier#cox-model#cbioportal
AuthorKang-chen
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Perform survival analysis on TCGA cancer data by interfacing with the cBioPortal API and lifelines to uncover how gene expression relates to patient outcomes.

Core Features & Use Cases

  • Data retrieval from cBioPortal for expression and clinical data
  • Kaplan-Meier survival analysis and log-rank test
  • Cox proportional hazards modeling
  • Support for multiple TCGA studies (LUAD, LUSC, BRCA, COADREAD, etc.)
  • Visualization of survival curves and hazard ratios

Quick Start

Provide a TCGA gene of interest to generate Kaplan-Meier survival curves with Cox analysis.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: tcga-survival-analysis
Download link: https://github.com/Kang-chen/cartabio-ide-config/archive/main.zip#tcga-survival-analysis

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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