sragent

What problem does it solve?

This Skill automates the complex and time-consuming process of navigating vast genomics databases like SRA/GEO, extracting specific metadata, and finding associated scientific publications. It eliminates manual searching, data conversion, and paper retrieval, allowing researchers to focus on analysis rather than data acquisition.

Core Features & Use Cases

• Accession Conversion: Seamlessly convert between GEO (GSE), SRA (SRP, SRX, SRR), and ENA (ERX, ERR) accession formats.
• Metadata Extraction: Automatically pull detailed information like sequencing platform, library prep, organism, and single-cell technology from genomics datasets.
• Publication Retrieval: Find and download full-text scientific manuscripts linked to SRA accessions from multiple sources.
• Use Case: A researcher needs to find all human single-cell RNA-seq datasets related to a specific disease, extract their metadata (e.g., 10X Genomics chemistry), and download the associated papers for review. This Skill automates the entire workflow, from initial search to paper delivery.

Quick Start

Convert GEO series GSE121737 to SRX accessions. What 10X Genomics technology was used for experiment ERX11887200? Download papers for SRX4967527.