spatial-genes
OfficialDiscover genes with spatial expression patterns.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the identification of genes whose expression is not randomly distributed across tissue samples, which is crucial for understanding tissue architecture and cellular microenvironments.
Core Features & Use Cases
- Multiple Detection Methods: Supports Moran's I, SpatialDE, SPARK-X, and FlashS for robust gene discovery.
- Visualization: Generates plots of top spatially variable genes on tissue coordinates and UMAPs.
- Use Case: In a spatial transcriptomics experiment, use this Skill to find genes that mark specific tissue regions or cell types, aiding in the interpretation of spatial organization.
Quick Start
Use the spatial-genes skill to find spatially variable genes in my data using Moran's I.
Dependency Matrix
Required Modules
scanpysquidpymatplotlibnumpypandasSpatialDErpy2flashs
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: spatial-genes Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#spatial-genes Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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