snakemake-workflow-engine
CommunityBuild and run reproducible scientific workflows.
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the creation and execution of complex, multi-step scientific workflows, ensuring reproducibility and scalability across different computing environments.
Core Features & Use Cases
- Reproducible Pipelines: Define workflows with clear input/output dependencies, ensuring consistent results.
- Scalability: Run workflows from a laptop to HPC clusters and cloud platforms.
- Environment Management: Use per-rule conda or Singularity environments for tool isolation.
- Use Case: Automate a multi-stage bioinformatics analysis pipeline, from raw sequencing data to variant calling and annotation, ensuring every step is tracked and can be rerun identically.
Quick Start
Use the snakemake-workflow-engine skill to execute the provided Snakefile with 8 cores.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: snakemake-workflow-engine Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#snakemake-workflow-engine Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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