SingleM Taxonomic Profiling Skill
CommunityProfile shotgun metagenomes with GTDB taxonomies.
Authorwwood
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Metagenomic samples often require fast, scalable taxonomic profiling to understand community composition; SingleM provides GTDB-based taxonomic profiles from marker-windows.
Core Features & Use Cases
- GTDB-based taxonomic profiling: Profiles are generated from 20 amino-acid windows within single-copy marker genes to assign taxonomy.
- Long- and short-read support: Works with both short- and long-read data, and can handle novel lineages.
- End-to-end workflow: Generates OTU tables and condensed taxonomic profiles via the pipe workflow; supports downloading reference metapackage data.
Quick Start
Run singlem pipe with your reads to produce a GTDB-based taxonomic profile.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: SingleM Taxonomic Profiling Skill Download link: https://github.com/wwood/singlem/archive/main.zip#singlem-taxonomic-profiling-skill Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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