seuratsubclustering
CommunityFine-grained re-clustering of cell subsets.
Authorpwwang
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Performs fine-grained re-clustering on specific subsets of cells within a Seurat object to resolve heterogeneity and reveal hidden subpopulations.
Core Features & Use Cases
- Complete clustering workflow on user-defined subsets, including PCA, UMAP, FindNeighbors, and FindClusters, to explore substructure within clusters or annotated cell types.
- Supports metadata- or barcode-based subsetting, multiple resolutions, and case-based outputs to compare hierarchical clustering results.
- Integrates with mutaters and subset expressions to tailor analyses for targeted biological questions, such as dissecting CD4 T cell or CD8 T cell heterogeneity.
Quick Start
Provide a Seurat object and a subset expression, and run the full re-clustering workflow on that subset.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: seuratsubclustering Download link: https://github.com/pwwang/immunopipe/archive/main.zip#seuratsubclustering Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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