screploading
CommunityLoad scTCR/scBCR data into scRepertoire quickly.
Authorpwwang
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Load scTCR-seq or scBCR-seq data from diverse formats into a scRepertoire-compatible object, unifying immune receptor contigs with single-cell RNA data for integrated analyses.
Core Features & Use Cases
- Supports multiple data formats (10x Genomics, AIRR, BD, Dandelion, Immcantation, MiXCR, ParseBio, TRUST4, WAT3R, Omniscope) and reads VDJ contigs.
- Auto-enabled when sample metadata contains TCRData or BCRData, enabling streamlined workflows.
- Produces a scRepertoire-compatible object ready for downstream clonotype analysis and integration with scRNA-seq.
Quick Start
Provide a sample metadata file with TCRData or BCRData paths and run the screploading step to create a scRepertoire-compatible object.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: screploading Download link: https://github.com/pwwang/immunopipe/archive/main.zip#screploading Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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