sc-communication
OfficialMap cell-cell interactions.
Data & Analytics#bioinformatics#ligand-receptor#single-cell#cell communication#CellChat#spatial biology#LIANA
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex and error-prone process of identifying and quantifying cell-cell communication pathways from single-cell RNA sequencing data.
Core Features & Use Cases
- Ligand-Receptor Analysis: Scores potential interactions between cell types using various established methods (CellChat, NicheNet, LIANA) or a built-in database.
- Multi-Method Consensus: Integrates results from multiple tools for more robust predictions.
- Visualization: Generates plots to visualize communication networks and key interactions.
- Use Case: Analyze how immune cells communicate with tumor cells in a cancer microenvironment to identify potential therapeutic targets.
Quick Start
Run cell-cell communication analysis on your processed single-cell data using the default method.
Dependency Matrix
Required Modules
scanpynumpypandas
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: sc-communication Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#sc-communication Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.