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sam-cell-seg

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Segment cells with SAM & MobileSAM.

Data & Analytics#cell segmentation#segmentation#image analysis#SAM#MobileSAM#polygon extraction
AuthorZurybr
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill streamlines the process of segmenting cells in images using advanced AI models like SAM and MobileSAM, converting raw segmentation masks into usable polygon data.

Core Features & Use Cases

  • AI-powered Segmentation: Utilizes SAM/MobileSAM for precise cell or object segmentation.
  • Mask Refinement: Cleans and refines initial segmentation masks.
  • Polygon Extraction: Converts segmentation masks into vector polygon coordinates.
  • Use Case: Process microscopy images to automatically identify and outline individual cells, exporting their boundaries as polygons for further analysis in a GIS or CAD tool.

Quick Start

Use the sam-cell-seg skill to segment cells in the provided image file 'cell_sample.png' and output the results as polygons.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: sam-cell-seg
Download link: https://github.com/Zurybr/lefarma-skills/archive/main.zip#sam-cell-seg

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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